Thomas,
The command
cmd.do(".../cealign.py")
runs cealign.py, which runs cmd.extend. So you should have the cealign
command in your namespace after the cmd.do. Have you tried running
cmd.do("your/path/to/cealign")
cealign(protA, protB)?
I just tried this on my system and it worked for me. Let
> Thomas,
>
> The PyMOL UI runs asynchronously. I think you are deleting your PDB
> files before they can be aligned. I made a couple changes in your
> script. Instead of calling cmd.do just call cealign directly. See
> below,
>
> query_template_chains = {
> "1ebh" : ["1ebg", "1els", "1one", "2on
Dear Pymol users,
I have to compare 20 different structures of the same protein, all with the
same origin.
The protein is a homotetramer and I am interested in comparing the catalytic
pocket of each monomer inside a single structure and across the 20
structures.
Also I would like to compare not
