On 12/11/2009 2:40 AM, MyLinkka wrote:
Thanks! It works nicely here!
One thing I want to ask is
Is there a way to make file association? e.g. associate *.pdb with pymol.
Ting
To associate PyMOL with PDB files, adjust the Python and PyMOL paths in
the attached PDB_file.reg registry file and
Dear Sir,
I, Kousik Kundu, am a Ph.D student at university of Freiburg,
Germany. I am using Pymol for my recent work. I need to to the
amino acids involve in an interaction. For example 1BM2 (PDB id)
is a complex of a SH2 domain and a small peptide. Here i want to
know which amino acids
Dear Kousik,
Sue Jones PROTORP server should do the trick:
http://bioinformatics.sussex.ac.uk/protorp
Cheers,
Thomas
On Wed, Dec 9, 2009 at 14:57, Kousik Kundu
kou...@informatik.uni-freiburg.de wrote:
Dear Sir,
I, Kousik Kundu, am a Ph.D student at university of Freiburg,
From a purely structural perspective you can look at the interface
residues script on the PyMOLWiki:
http://pymolwiki.org/index.php/InterfaceResidues
The interface could be detected by
run /path/to/interfaceResidues.py
fetch 1bm2
interfaceResidues 1bm2, c. A, c. L
But, you
That will work for the official PyMOL distribution only. PymolWin is not
in the public SVN repository and the registry file is easier to use in
computer lab environments.
Christoph
On 12/11/2009 12:38 PM, Thomas Stout wrote:
A perhaps easier way is to right-click on a pdb file with the mouse
A perhaps easier way is to right-click on a pdb file with the mouse and
choose Open with... In that sub-menu select Choose program. In the
subsequent window that appears, select PymolWin as the program you want
to open the PDB file with AND then also check the box underneath that
says Always use
