Hi Jason , and Nat ,
I just tried it on my mac laptop and the set
cartoon_cylindrical_helices works just as it should.
Followng that I tried it on two separate ubuntu 64 bit boxes , running
pymol version 1.2 and 1.3 and python version 2.5 and 2.6 , both of
them dont do the right thing i.e allow
Hi all,
I finally got time and access to machine on which this can be
produced. Two workarounds I found were:
(1) Minimnize PyMOL
(2) Maximize PyMOL
(3) Click on the openGL window and drag the PyMOL window one or two pixels
(4) Click inside the openGL window.
Does PyMOL refresh?
or
(1) Minimni
The version that seg faults in fedora 13 is the edu build: *PyMOL
1.2edu1* (August 2009)
Linux: pymol-1_2edu1-bin-linux-x86-centos45.tgz
The fedora 13 rpm build does not segfault.
I am really confused on the differences between the RPM and the official
builds by PyMol via supscription.
http:
Hi Hari,
The following,
fetch 1cll 1ggz, async=0
set cartoon_cylindrical_helices, 1, 1cll
as cartoon
works just fine for me.
Can you send me your PSE or pdb files? Are you setting anything else?
Cheers,
-- Jason
On Thu, Jun 17, 2010 at 6:41 PM, hari jayaram wrote:
> I am trying to show a m
On Thu, Jun 17, 2010 at 3:41 PM, hari jayaram wrote:
> In my tests obj01 is the object created from a selection and then the
> property set for that object. But it seems that this does not just
> create a cylindrical helix for just that object.
>
> For some reason the cartoon_cylindrical_helices
I am trying to show a molecule in ribbon representation , where all
the helices except one helix are in ribbon form and a solitary helix
is shown as a cylinder.
Can someone confirm that set cartoon_cylindrical_helices , 1 , (obj01)
Followed by show cartoon , (obj01).
Does not show only (obj01) as
Hi Nat,
Group appeared in v1.0.
Cheers,
-- Jason
On Thu, Jun 17, 2010 at 12:58 PM, Nat Echols wrote:
> Sort of an obscure question, but I've run into problems with a plugin I
> wrote - based on what I've seen so far, I'm pretty sure it isn't in 0.99,
> but it would be helpful to know what the
Hi Nat,
"group" works for me in 1r1 or later. Not sure about earlier version of
the 1.0 vintage.
HTH
Carsten
From: Nat Echols [mailto:nathaniel.ech...@gmail.com]
Sent: Thursday, June 17, 2010 12:58 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] what versi
Help,
I'm getting a seg fault on fedora 13.
What could be wrong?
Kevin
=
pymol
Segmentation fault (core dumped)
more /etc/fedora-release
Fedora release 13 (Goddard)
ldd pymol.exe
linux-gate.so.1 => (0x5000)
libpthread.so.0 => /lib/libpthread.so.0 (0x0
Sort of an obscure question, but I've run into problems with a plugin I
wrote - based on what I've seen so far, I'm pretty sure it isn't in 0.99,
but it would be helpful to know what the minimum required version is.
thanks,
Nat
--
Andreas,
That's news to me. Are you perhaps using sphere_mode, 5 when you
don't have shaders?
Cheers,
-- Jason
2010/6/16 Andreas Förster :
> Dear all,
>
> the latest PyMOL, built from source, refuses to display spheres. This
> problem occurs with rev 3910 as well as with rev 3909 on 32-bit ma
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