Re: [PyMOL] Different color on each side of strand

2011-03-09 Thread Keitaro Yamashita
Hi, Yes, there're definitely a few (?) exceptional cases. But maybe people don't use this feature in such case. Anyway, this feature is not included in current PyMOL, right? Then, is it hard to implement this feature (many changes in code required)? Keitaro 2011/3/8 gilleain torrance

Re: [PyMOL] pisa

2011-03-09 Thread Tsjerk Wassenaar
Hi Kanika, First of all, please try to phrase your questions in fully written english, in stead of a phonetic-like writing with lots of abbreviations... It's sometimes kind of hard to follow. The reason for it, as well as other very useful hints are expanded on

Re: [PyMOL] Rendering Large Scene Crashes Pymol

2011-03-09 Thread Ian Slaymaker
Upgrading to 64 bit version of licensed Pymol 1.3 fixed all rendering issues. On Wed, Mar 2, 2011 at 1:33 PM, Jason Vertrees jason.vertr...@schrodinger.com wrote: Hi Ian Tsjerk, You can try to set hash_max (set hash_max,200) to put a limit on memory usage. Then again, an immediate crash

[PyMOL] MTZ Files

2011-03-09 Thread Jason Vertrees
Greetings, We're wrapping up our work for the PyMOL v1.4 release. A new Incentive PyMOL feature will be the ability to load and calculate maps from MTZ files. These files can be tricky to read for various reasons (endian issues, machine word size variance, etc). I would like to test my MTZ

[PyMOL] RMSD and Helices in a Protein

2011-03-09 Thread Angelo Rossi
Hello: I have a protein with several helices and believe only one of them (the one closest to that active center) moves significantly during a simulation. Can someone suggest a way to use pymol to highlight the movement of the helices in this protein. I want to select 20 structures from a

Re: [PyMOL] MTZ Files

2011-03-09 Thread Jason Vertrees
Hi Keitaro, Is map automatically extended around the view-center within some radius by crystallographic symmetry operations? This feature won't be in the v1.4 release of PyMOL. It might however show up in a later update release. Can other reflection formats be opened? For example, .hkl