Hi Angelo,
instead of calculating RMSD you could monitor pairwise helix angles
over states. See attached script, it depends on the
http://www.pymolwiki.org/index.php/AngleBetweenHelices script.
Cheers,
Thomas
On Thu, Mar 10, 2011 at 12:05 AM, Angelo Rossi
angelo.raymond.ro...@gmail.com wrote:
Just another reminder:
If the version of the external python and the python shipped with
PyMOL are different enough on the user's computer, the package might
still fail to work in PyMOL even if the user has installed the package
using the external python and edited the PYTHONPATH.
So, how
Hi all,
I want to print some info during loading of my data so I've added some
print's. I wanted to take advantage of printing the backspace character \b
to go back and overwrite the previous value.
Unfortunately, I've found out that the finish_launching() command breaks
this. Here is a simple
Hi Nicolas,
I want to print some info during loading of my data so I've added some
print's. I wanted to take advantage of printing the backspace character \b
to go back and overwrite the previous value.
Can you use the curses Python module
(http://docs.python.org/library/curses.html) for
Hi Roberto,
This has always been a stumbling block for PyMOL. Either you compile
from source and add any modules you want, or you use what we provide
in the Incentive or Academic builds.
In the past, to keep PyMOL light Warren always shipped a stripped
Python version. Because of PyMOL's
Hi Hongbo,
thanks for your reply.
So, how about ship all the BioPython packages you need in your python
code together with your plugin? Of course all dependencies should be
included.
Is not so simple. A library like Biopython can't be installed as a plugin. An
installer (OS specific) program
Hi Jason,
thanks for your reply.
As a note, the new PyMOL builds will be quite a bit larger because
we're adding more useful Python modules and some other libraries to
the default install. Along with Numpy, PIL and friends, we'll also be
distributing BioPython.
This is a good news.
Could you
I really like the fact that Jason will be including more libraries with
PyMOL in the future.
I once needed to distribute a library that depended on BioPython. It turned
out that, in my case, I only cared about a few specific files from
BioPython, so I was able to strip out the necessary
Hi Michael,
did you install each scattered file as a plugin?I am considering this option
although looks quite tricky for disinstallation.
If I don't fail the authors of Biopython allow this scattered use of their code
(a citation of course is needed).
Cheers, roberto
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