I used symexp command for 3QK9 using distance of 2.75 to generate
ASU(asymmetric unit). Does symexp generate these symmetry mates from the
remark290 of PDB file? I couldnot find the code for symexp in pymolwiki. Can
anyone help out?
Regards,
Kanika
--
Dear PyMOLers,
As many of you might be aware of, MSMS is an excellent program developed
by Michel Sanner for computing protein surface, especially solvent
excluded surface (SES). (see http://mgltools.scripps.edu/packages/MSMS/
). Due to its outstanding usability, Robert Campbell had already
pr
> "pymol.exe: error while loading shared libraries: libtk8.5.so: cannot open
> shared object file: No such file or directory"
>
> The file is there, and is readable. Any ideas? I have run ./setup.sh to
> establish all the correct environment variables. No problem running pymol
> 1.3.1 in the same V
When I opened a pdb file generated as molecular replacement result by
Phaser, my protein is shown outside of unit cell. Does anyone know why this
might happen? I also tried supercell command, but still can not find one
unit cell that will wrap around the structure.
I also run MR with EPMR, and my
Hi Roger,
Running PyMOL from within a VM will give you some issues: you're
relegated to a software renderer instead of hardware. They typically
enable you to use PyMOL, however you lose speed and newer features
(eg. shaders). Can you please send me a screenshot of what v1.4 looks
like when it's
In pymol 1.4, I get a strange error in Ubuntu
10.04 (VM):
"pymol.exe: error while loading shared libraries: libtk8.5.so:
cannot open shared object file: No such file or directory"
The file is there, and is readable. Any ideas? I have run
./set
When Pymol 1.4 is started in Ubuntu 9.04 with
the latest available Nvidia driver for this OS (version 180) I get
the following startup error (and strange window rendering where
bits of the pymol rendering window are transparent):
"Detected OpenGL version p
Dear Edith,
You have overwritten the python that comes with the system with that from a
mgltools install. That particular install is 32 bit, your system is 64 bit.
Look in your shell configuration file (.bashrc most probably) for something
like export PYTHON_PATH and comment it temporally.
Rerun t
I am working on Linux 2.6.18-8.el5 x86_64 GNU/Linux
I had problem with the 0,99 version of pymol (it was working but with
very strange behaviour thant no one could explain), so I am trying to
install the 1.3r2 version
I download it and then followed the instructions :
I untarred and dezipped a
