Re: [PyMOL] Movie to export

2011-11-09 Thread Troels Emtekær Linnet
What codec do I need to install?? MEncoder 1.0rc4-4.5.2 (C) 2000-2010 MPlayer Team Option x264encopts: Unknown suboption nodct_decimat success: format: 16 data: 0x0 - 0x0 MF file format detected. [mf] search expr: *.png [mf] number of files: 537 (4296) [demux_mf] file type was not set! trying

Re: [PyMOL] Movie to export

2011-11-09 Thread Marius Retegan
I used this a long time ago, but after googling for the error from bgra to yuv420p I guess that is a problem with the color space conversion that memcoder tries to enforce by default. Maybe you could try imposing the color space by adding -vf format=bgra, but I think that the video codec is not

Re: [PyMOL] Movie to export

2011-11-09 Thread Tim Schulte
Hi, Quick time player 7 pro does a great job for me. Cheers Tim Am 11/8/11 9:54 PM, schrieb Troels Emtekær Linnet: Hi. I have made a nice little movie in Pymol. 1500 frames. So now I am wondering what is the best method to export? At the moment I do export to .png with ray tracing each

[PyMOL] CIF support?

2011-11-09 Thread Francis E Reyes
Hi all I'm trying to visualize a small molecule . The format is CIF (from SHELX small molecule refinement). Is there support for this file format? Thanks! F - Francis E. Reyes M.Sc. 215 UCB University of Colorado at Boulder

[PyMOL] Put scripts in a svn folder

2011-11-09 Thread Troels Emtekær Linnet
Hi Pymolers. I sometimes find small errors in my scripts, which I then correct. But then I get a little sad, that now my unfinished script still lives out there. So I think, why is the pymolwiki scripts not under subversion control? Then authors could push corrections to their scripts to the

Re: [PyMOL] Movie to export

2011-11-09 Thread Vitali Stanevich
have a look at this link: http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Morph_with_Chimera disregard morph part. you can modify script to contain frames instead of states. i installed ffmpeg from repositories on ubuntu and don't remember any issues with kodecs. vitali On Wed, Nov

Re: [PyMOL] Movie to export

2011-11-09 Thread Vitali Stanevich
one more thing: ffmpeg script at that link didn't work for me so i had to modify it like that ffmpeg -f image2 -qscale 5 -r 24 -b 9600 -i image%d.png movie.mpg On Wed, Nov 9, 2011 at 11:22 PM, Vitali Stanevich stanev...@wisc.eduwrote: have a look at this link:

Re: [PyMOL] PyMOL-users Digest, Vol 66, Issue 4

2011-11-09 Thread Liu, Cheng
-原始邮件- 发件人: pymol-users-requ...@lists.sourceforge.net 发送时间: 2011年11月10日 星期四 收件人: pymol-users@lists.sourceforge.net 抄送: 主题: PyMOL-users Digest, Vol 66, Issue 4 Send PyMOL-users mailing list submissions to pymol-users@lists.sourceforge.net To subscribe or unsubscribe