Dear PyMol users!
As I've understood there are no posible ways to represent H-bonds in
proteins in explicit manner. So I'm looking for possible way to do it via
some plugin or another way.
In particular I need
1) to visualize H-bonds in some structural motifs like coiled coil wich are
dimers of alpha helices ( so I'd like to see H-bonds beetwen separate
alpha helices )
2) to visualize H-bonds in spicified SS structure ( e.g during formation of
the alpha helices)- so I'd like to see H-bonds beetwen amide and Carboxy
groups in specified amino acid sequence.
3) Finally I'd like to check H-bond in protein-ligand complex ( beetwenn
specified ligand groups as well as some amino acid residues of the ligand
binding pocket)
Thanks,
James
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