I have this problem when I run pymol using the Intel driver on my Ubuntu
11.10 64bit machine. However, if I fire it up using the nvidia driver, I
have no issues and it's very smooth. As someone else mentioned, this is
likely due to the poor quality of Intel Sandy Bridge graphics chips.
Here are
Julian,
Can you please send me a screenshot of what you see?
Also, does:
unset use_shaders
help? It sounds like your video driver needs to be updated.
Cheers,
-- Jason
On Wed, Dec 7, 2011 at 1:15 PM, Julian Zachmann
wrote:
> Dear Pymol-Users,
>
> I have a rather strange error. I can open p
Hi George,
Check out http://www.pymolwiki.org/index.php/Pseudoatom.
Please Google or search the PyMOLWiki for common things like this.
Cheers,
-- Jason
On Thu, Dec 8, 2011 at 3:59 PM, George Kvaratskhelia
wrote:
> Hi PyMol users,
>
> I'm new to pymol and was wondering if there was a way of cr
Dear Pymol-Users,
I have a rather strange error. I can open pymol without having any problems
or warnings.
But when I'm looking at a protein then - especially when it is in cartoon
mode, and even more when i move it around a lot - it is getting more and
more blurry and it seems as if there are man
Hi PyMol users,
I'm new to pymol and was wondering if there was a way of creating temporary
atoms that can be used to create distance objects? Or if there was a way of
creating distance objects between two positions in space without creating a
temporary atom? I'm writing a function file and this f
Greetings,
I learned a little more about Intel video drivers for Windows
yesterday and wanted to share the news with the community.
First, there is a difference between "Intel Graphics" and "Intel HD
Graphics" and their other mobile chipsets. It is important that you
choose the correct driver for
Can this plugin solve it:
http://www.pymolwiki.org/index.php/Rotamer_Toggle
Note, that you have to collect the script yourself, and replace
the original pymol menu.py file.
Not a easy solution to problem.
Note, it the script: http://www.pymolwiki.org/index.php/Rotkit
You can mutate through a com
Dear PyMOL List
I'm frequently using the PyMOL mutagenesis wizard. Consider the mutation
of tryptophan to phenylalanin. If the sidechain is mutated from W to F,
its reasonable to assume that the plane of the phenyl moiety of F
would/should/could/might lie in the same plane as the indol part of t
Hi Thomas and all,
I branched the thread from the original:
http://sourceforge.net/mailarchive/message.php?msg_id=28507590
>> After PyMOL running, console says:
>> "freeglut (pymol): Unable to create direct context rendering for window
>> 'PyMOL Viewer'"
>> but I will try to check and contact he
