Re: [PyMOL] Transformation Matrices

2012-01-03 Thread Jacob Keller
Hi Jason, thanks for calling my attention to this--this is very good to know (I looked up the camera/model space idea as well--very helpful)! Jacob On Mon, Jan 2, 2012 at 9:38 PM, Jason Vertrees jason.vertr...@schrodinger.com wrote: Jacob, The easiest will be to use matrix_copy. All objects

[PyMOL] util.cba* for deeppurple...

2012-01-03 Thread Francis E Reyes
Hi all Is there anyway to change the carboncolor for coloring by atom type to deep purple? http://www.pymolwiki.org/index.php/Advanced_Coloring#Coloring_by_atom_type shows that i only have a limited set of util.cba* commands. Thanks! F -

Re: [PyMOL] Transformation Matrices

2012-01-03 Thread Jason Vertrees
Jacob, Thomas Holder apprised me of a detail that effected the cealign code (I used transform_selection instead of transform_object). This code has been updated in the open-source repository; matrix_copy should now work after aligning with cealign. Cheers, -- Jason On Tue, Jan 3, 2012 at 1:11

Re: [PyMOL] util.cba* for deeppurple...

2012-01-03 Thread Nat Echols
On Tue, Jan 3, 2012 at 10:43 AM, Francis E Reyes francis.re...@colorado.edu wrote: Is there anyway to change the carboncolor for coloring by atom type to deep purple? http://www.pymolwiki.org/index.php/Advanced_Coloring#Coloring_by_atom_type shows that i only have a limited set of util.cba*

Re: [PyMOL] util.cba* for deeppurple...

2012-01-03 Thread Francis E Reyes
Thanks Nat Seems like the pymolwiki doesn't show you can use util.cba in that way . In fact help util.cba is ambiguous. Anyway to specify an object or selection with that? util.cba(deeppurple, (selectionhere)) doesn't seem to work. On Jan 3, 2012, at 11:56 AM, Nat Echols wrote: On

Re: [PyMOL] util.cba* for deeppurple...

2012-01-03 Thread Nat Echols
On Tue, Jan 3, 2012 at 11:08 AM, Francis E Reyes francis.re...@colorado.edu wrote: Seems like the pymolwiki doesn't show you can use util.cba in that way  . In fact help util.cba is ambiguous. Anyway to specify an object or selection with that?  util.cba(deeppurple, (selectionhere))