Dear PyMol users!
I'm analysing polar interactions occured during MD simulation of my
protein. In particular I have PDB file obtained from such trajectory where
I'd like to check new polar contacts ( salt bridges first of all) within
selection region. I've tried to select specified region and use Find polar
contact- > within selection as well as other options from this context meny
but results was blank and I have not seen any polar contacts despite some
charged residues were presented in the adjacent interface positions in the
selected region.
IS there any else way to study dynamics of the salt-bridges formation based
on the selected regions in the snapshots ?
Thanks for help,
James
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