Hi Anika,

If you open molecules in the same window then yes they will be the same scale. 
However if you open two different molecules in different windows, the view will 
not necessarily be to scale (e.g. small molecule drug compared to a protein).

Hope this helps

Joel

-----Original Message-----
From: anika.bra...@unil.ch [mailto:anika.bra...@unil.ch] 
Sent: Wednesday, 6 June 2012 2:17 a.m.
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] different molecules - same scale?

Hello,
if I import different files in Pymol and watch the molecules for the first time 
in one window, are they automatically in the same scale? I want to make sure 
that the molecules are shown in one scale to align them.

Thanks!
Anika


Anika Braune, PhD student
Pierre Goloubinoff group
Department of Plant Molecular Biology
University of Lausanne
Unil-Sorge, Biophore Building
CH- 1015 Lausanne

anika.bra...@unil.ch

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