[PyMOL] post to list

2013-02-04 Thread Michael L Oldham
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[PyMOL] problem setting up morph under eMovie

2013-02-04 Thread Michael L Oldham
My institution a subscription to incentive PyMol. In the past, I have used the morph that appeared under the list of eMovie commands but now it does not appear. I am not sure what i am missing: a vaild rigimol file, the wrong version (currently using Version 1.5.0.4). Regardless I also need

[PyMOL] rainbow coloring from the N to C terminus of multiple backbones shown as ribbons

2013-02-04 Thread Muhammad Naqvi
Hi Folks, I have about 2000 pdb files loaded into one session, with their backbones shown as ribbons, that have been aligned by select residues ranging from 15-19 using the align_all command. The problem I have is coloring, right now I have to manually color in rainbow into all of the residues by

[PyMOL] 1st Call For Papers, 19th Annual Tcl/Tk Conference 2012

2013-02-04 Thread Andreas Kupries
20'th Annual Tcl/Tk Conference (Tcl'2013) http://www.tcl.tk/community/tcl2013/ September 23 - 27, 2013 Bourbon Orleans Hotel New Orleans, Louisiana, USA Important Dates: Abstracts and proposals due June 22, 2013 Notification to authors August 5, 2013 Author materials due

Re: [PyMOL] rainbow coloring from the N to C terminus of multiple backbones shown as ribbons

2013-02-04 Thread Thomas Holder
Hi Ali, paste this into the PyMOL command line: unset ribbon_color, (*) set ribbon_color, default for name in cmd.get_object_list(): \ cmd.spectrum(selection=name + and polymer) This will do rainbow coloring on each object separately. The ribbon_color setting will override atom colors,

Re: [PyMOL] rainbow coloring from the N to C terminus of multiple backbones shown as ribbons

2013-02-04 Thread Muhammad Naqvi
You are a genius Thomas! On Mon, Feb 4, 2013 at 5:23 PM, Thomas Holder thomas.hol...@schrodinger.com wrote: Hi Ali, paste this into the PyMOL command line: unset ribbon_color, (*) set ribbon_color, default for name in cmd.get_object_list(): \ cmd.spectrum(selection=name + and