Hi,
Does anyone know how to ray trace an image of an active site in sphere
representation that is clipped, without getting a weird result that I
assume comes from clipping the spheres? It looks like unfilled circles.
Thank you
-Yarrow
--
Yarrow Madrona
Graduate Student
Molecular Biology and
Hi Yarrow,
This is a known problemhttp://sourceforge.net/p/pymol/feature-requests/53/.
We'll try to fix this soon.
Cheers,
-- Jason
On Mon, Mar 11, 2013 at 2:05 PM, Yarrow Madrona amadr...@uci.edu wrote:
Hi,
Does anyone know how to ray trace an image of an active site in sphere
# Hey :)
# Here is a work around...
# First import the numpy module
import numpy
# Then store the viewing matrix as 6 by 3 numpy array.
M=numpy.array(cmd.get_view()).reshape(6,3)
# Now place a pseudoatom at the position of the camera
# Turn off autozoom to keep the view
set auto_zoom, 0
Along those lines: The script SelectClipped from the PyMOLWiki does a good
job here, at least for spheres.
http://pymolwiki.org/index.php/SelectClipped
Example (after having loaded the script or installed it with the plugin
manager):
PyMOL select_clipped
PyMOL hide everything, not clipped
