Hello,
I'm using MacPymol 1.5.0.4
When I save a ray traced .PNG file with set ray_opaque_background, 0 It does
gives me a transparent background when I put the picture into other apps, e.g.
Powerpoint. However, when I save it as a .mov file, I can see that pymol is
trying for a transparent bac
numpy issue fixed in svn r4036.
Cheers,
Thomas
Thomas Holder wrote, On 07/23/13 11:18:
> Hi Andreas,
>
> I recently made a small change regarding numpy support. Can you please
> send me the output of the following command:
>
> ls /usr/lib64/python2.6/site-packages/numpy/core/include/numpy
>
Hi Andreas,
I recently made a small change regarding numpy support. Can you please
send me the output of the following command:
ls /usr/lib64/python2.6/site-packages/numpy/core/include/numpy
Meanwhile, just disable numpy support by removing the try/except block
in setup.py line 221.
Thanks,
T
Dear all,
following up on my previous post, pymol-v1.6.0.0.tar.bz2 from
http://sourceforge.net/projects/pymol/ compiles just fine on my machine.
It's the most recent source from svn that doesn't.
Andreas
--
Andreas Förster
Crystallization and Xray Facility Mana
Dear all,
I'm installing PyMOL from svn on a RHEL 6.2 machine. This has always
worked. Today, I get an "command 'gcc' failed with exit status 1" error
(see below).
Any suggestions? Is there something amiss with the source?
Thanks.
Andreas
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -
Hi Gianluigi,
PyMOL might find more pymolrc files than you are aware of. Just to be
sure, try this to get a hint:
PyMOL> print invocation.options.deferred
Also, check which plugins are installed and eventually disable them.
Cheers,
Thomas
Gianluigi Caltabiano wrote, On 07/23/13 10:44:
> Hi T
Hi Gianluigi,
I can only reproduce your problem with retain_order=1, not with
retain_order=0 (which is the default). Could it be that in your pymolrc,
you do "set retain_order, 1"?
I don't think there is a difference between 1.6 and previous versions.
Cheers,
Thomas
Gianluigi Caltabiano wrote
Hi Yeping,
unfortunately, the caver plugin doesn't take a selection expression, but
only selection names. Regarding your selection expression, you miss the
"name" operator. So this should work:
PyMOL> select startsele, chain A and resid 21 and name CA
In Caver: "Specify selection: startsele"
Ho
