You can also use the builder module.
Click on the two atoms and then delete bond button
-Original Message-
From: Martin Hediger [mailto:ma@bluewin.ch]
Sent: Wednesday, 31 July 2013 12:40 a.m.
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Unbond two atoms
Dear PyMOL users
Hello Pymol Users. I just started getting into Pymol and encountered two
issues I'd like to ask about.
1. When trying to load amber topology and coordinate files that do not
have the default extension, I get this error:
PyMOL>load ../Cdp_UCM.prmtop, CDP, 1, top
ObjectMolecule: Attem
Hi,
I put some instructions on the PyMOLWiki for those who want to play with
the Leap Motion Controller.
http://pymolwiki.org/index.php/Leap_Motion
Cheers,
Thomas
David Hall wrote, On 07/29/13 17:18:
> Jason can fill you in if there's an update, but the latest status update
> I'm aware of was
Hi all,
I'm not very experienced with installing things from source, so you'll have to
bear with me a bit here….
I'm trying to get pymol 1.6.0.0 working on my macbook (OS X 10.8.4). The
install seems to go ok (home directory set to /sw) but when I try to launch
pymol, it exits with this messag
Hi Martin,
that's what edit mode is for. Right-click on the mouse mode panel,
choose "3-Button Editing", pick the two atoms and type "unbond".
Cheers,
Thomas
Martin Hediger wrote, On 07/30/13 14:40:
> Dear PyMOL users
>
> Sometimes PyMOL draws bonds between atoms which are not supposed to be
Dear PyMOL users
Sometimes PyMOL draws bonds between atoms which are not supposed to be
connected. I know it is possible to unbond them using "unbond atom1,
atom2", however this requires to always select the atoms and rename the
selections to "atom1" and "atom2", respectively. It would be great
Dear PyMOL Users,
I would like to announce you the plugin for PyMOL, which allows to perform
molecular dynamics simulation on PyMOL loaded molecules using GROMACS and
display results back to PyMOL in form of the animation.
You can find more information on PyMOL Wiki:
http://www.pymolwiki.org/index
