Hi everyone,
How to write PyMol commands in Python script, save a session and then save a
.png file of the same ?
I have an input file which has the protein information i.e name, chain, and a
list of residues.
I want to plot the C-alpha atoms of these residues for each protein calculate
Hi all,
as Raj, I'm also wondering if there is any way to embed PyMOL in my PyQt4
GUI.
Does anyone has any suggestion about where/how to start?
Thanks in advance,
Alessia
Hello all,
I have recently been looking for tips or help on embedding PyMol into a GUI
built upon Qt4. I looked at this
Hi
Try to run
self.pymolInstance.finish_launching()
after
self.pymolInstance.start()
2013/9/4 Alessia Visconti alessia.visco...@gmail.com
Hi all,
as Raj, I'm also wondering if there is any way to embed PyMOL in my PyQt4
GUI.
Does anyone has any suggestion about where/how to start?
On Wed, Sep 4, 2013 at 12:48 PM, Alessia Visconti
alessia.visco...@gmail.com wrote:
Hi all,
as Raj, I'm also wondering if there is any way to embed PyMOL in my PyQt4
GUI.
Does anyone has any suggestion about where/how to start?
if you need to embed PyMol in a C++ Qt application you can take a
This is a good news (and starting point), thanks for the tip!
On the other hand I need to translate all my code in C++. Any thought of
making a version for a Python Qt application? ;)
Cheers,
Alessia
On 4 September 2013 13:18, Massimiliano Pippi ma...@evonove.it wrote:
On Wed, Sep 4, 2013 at
I couldn't reproduce the exact error message you received, but I will note:
(1) your splitting of lines leaves out the chain, so chain is never defined
(2) line 9 of your python is missing an opening quotation mark before (resi
matching the closing quotation mark right before the % sign
(3) line
Hi everybody,
Using MacPyMOL 1.6.0.0 Incentive Build, I no longer can see residue
numbers in the sequence if the background is set to white. I have been
playing with all the seq_view_* settings (thanks for documenting them
clearly within the Edit All Settings window!), especially
For the record...
-- Forwarded message --
From: Pascal Auffinger p.auffin...@ibmc-cnrs.unistra.fr
Date: Wed, Sep 4, 2013 at 3:54 PM
Subject: Re: [PyMOL] issue with the allign command
To: tsje...@gmail.com
Hi Tsjerk,
Apparently, the problem comes from the fact that I used
set
Hi Vaheh,
there should be no color difference, apart from lighting effects. Ray
tracing always draws cylinders for mesh, real-time rendering supports
lines and cylinders.
Real-time rendering and ray tracing should be almost identical with
these settings:
PyMOL set use_shaders
PyMOL set
On Wed, Sep 4, 2013 at 2:29 PM, Alessia Visconti
alessia.visco...@gmail.com wrote:
This is a good news (and starting point), thanks for the tip!
On the other hand I need to translate all my code in C++. Any thought of
making a version for a Python Qt application? ;)
Good for you, embedding
You just have to Ray the figure to see the changes.
On Sep 4, 2013, at 10:21 AM, sunyeping sunyep...@aliyun.com wrote:
Dear all
I want to make line presentation in pymol looks more thicker so I enter set
line_width, 3, but the lines in the viewer window don't show any change.
Have you
Thanks, Vaheh. As I did say that in my first post, actually purple,
brown, forest etc. work too. But none of the primary colors (RGB or
CMYK) does. And a number of them (like pink) give wrong colors.
And thanks for confirming the issue.
Engin
On 9/4/13 4:03 PM, Oganesyan, Vaheh wrote:
Engin,
Engin,
If you go to Edit_all and change the seq_view_label_color to grey the numbers
will become visible with white bkgr.
Vaheh
-Original Message-
From: Engin Özkan [mailto:eoz...@stanford.edu]
Sent: Wednesday, September 04, 2013 4:40 PM
To: pymol-users@lists.sourceforge.net
I forgot to explicitly say, this is only for the Sequence View panel,
which has a black background regardless of the background parameter. And
it applies to both sequence numbers and chain labels. Sequences
themselves are displayed correctly.
Engin
On 9/4/13 12:59 PM, Engin Özkan wrote:
Hi
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