[PyMOL] MacPymol + Missing Features (APBS?)

2014-02-13 Thread João Rodrigues
Dear all, I had the incentive version installed for a while (v1.7 beta2) and I was surprised to see that in the [A] menu, under 'generate' there was an option to generate an electrostatic map with apbs. Unfortunately my laptop HD died, and when I reinstalled everything today this option is

Re: [PyMOL] MacPymol + Missing Features (APBS?)

2014-02-13 Thread Thomas Holder
Hi João, I guess you had the psico module installed, which indeed adds an APBS option to the A generate menu. http://pymolwiki.org/index.php/psico Cheers, Thomas João Rodrigues wrote, On 02/13/14 14:44: Dear all, I had the incentive version installed for a while (v1.7 beta2) and I was

Re: [PyMOL] MacPymol + Missing Features (APBS?)

2014-02-13 Thread João Rodrigues
Hi Thomas, Thank you very much, that was exactly it. After a while I lost track of what I had installed.. Cheers, João 2014-02-13 20:59 GMT+01:00 Thomas Holder thomas.hol...@schrodinger.com: Hi João, I guess you had the psico module installed, which indeed adds an APBS option to the A

Re: [PyMOL] apbs plugin

2014-02-13 Thread jp d
hi, more information: down in function askfilename if i change self.activate() to self.show() i can get the file dialogue to pop up but cant do anything with it. its also near where tabs and spaces start making for confusing indentation. that might be the source of the problem.

[PyMOL] generate solvent exclusive surface with scaled VDW radii

2014-02-13 Thread ymei
Hi all, Can anyone tell me how to generate the solvent exclusive surface with scaled (e.g. 1.2, 1.4, 1.6, etc) VDW radii for protein? I want to visualize the electrostatic potential on these surfaces, in order to get an idea how the potential changes from the protein to its vicinity. Thank