Re: [PyMOL] Pseudo AxPyMol

2014-03-04 Thread Folmer Fredslund
Hi Jordan, I don't know if this helps you, but you can start pymol in "presentation mode" (by saving a session with scenes and then edit the name to "psw" instead of "pse"). Then you will immediately go full-screen and hitting space (or the clicker I presume) will let you move to the next scene. T

[PyMOL] Pseudo AxPyMol

2014-03-04 Thread Jordan Willis
I’m using powerpoint for mac, so I don’t have the luxury of Axpymol (any plans for OSX?) I wanted to make a movie that iterates through scenes of a PyMol session and pauses there until I hit the “next” button on powerpoint. My workaround was to simply make a movie that went trough all scenes an

Re: [PyMOL] command to deactivate/hide an object

2014-03-04 Thread Jordan Willis
A super hack way is this: hide all python my_list = cmd.get_object_list() # gets all objects loaded index = 0 def next_thing(): global index cmd.show('sticks', my_list[index]) cmd.hide('sticks', my_list[index - 1]) index += 1 def last_thing(): global index index -= 1

Re: [PyMOL] command to deactivate/hide an object

2014-03-04 Thread Thomas Holder
Hi Thomas, sure, it's "enable" and "disable". http://pymolwiki.org/index.php/Enable http://pymolwiki.org/index.php/Disable Cheers, Thomas On 04 Mar 2014, at 13:25, Thomas Evangelidis wrote: > Hi, > > Is there some command that deactivates an object, namely something equivalent > to clicki

[PyMOL] command to deactivate/hide an object

2014-03-04 Thread Thomas Evangelidis
Hi, Is there some command that deactivates an object, namely something equivalent to clicking on an object name at the object panel? I am loading multiple files and render them as sticks but the memory overflows. If there was a command to keep the stick representation but deactivate the object (hi

Re: [PyMOL] forward and backward keyboard shortcuts

2014-03-04 Thread Jason Vertrees
Thomas, Right and left arrow keys. Cheers, Jason On Tuesday, March 4, 2014, Thomas Evangelidis wrote: > > Hi, > > Is there any keyboard shortcut to move to the next or the previous state > of an object, namely something equivalent to "forward" and "backward" > commands? > > > -- > > =

[PyMOL] forward and backward keyboard shortcuts

2014-03-04 Thread Thomas Evangelidis
Hi, Is there any keyboard shortcut to move to the next or the previous state of an object, namely something equivalent to "forward" and "backward" commands? -- == Thomas Evangelidis PhD student University of Athens Faculty o

Re: [PyMOL] Color starting midway between adjacent chains

2014-03-04 Thread I-Ji Jung
Hi David, Thanks. But what about between all chains? I mean, so between chains B and C and so on. I need a generic script that can be applied for any protein. Thanks! ?? ??: David Hall ?? ??: ?2014?? ?3?? ?4?? ?2?:?57 ?? ??: I-Ji Jung