Re: [PyMOL] Font problem

On 11/03/14 07:52, Justin Lecher wrote: On 10/03/14 21:52, Thomas Holder wrote: Hi Justin, this is fixed in SVN rev 4070, sorry that it took so long. Cheers, Thomas Hi Thomas, Thanks a bunch. I will try it out tomorrow on my 3D machine. Cheers, Justin Looks beautiful now.

[PyMOL] ALPHA cgo causes COLOR to be ignored

Dear PyMOL users, I'm wondering about coloring CGO objects in PyMOL. In the recent version 1.7. If ALPHA is specified for a cgo object, all the colors are neglected. In version 1.6 and previous everything works just fine. Is this a bug, an intension or am I missing a point somewhere? Let's

Re: [PyMOL] ALPHA cgo causes COLOR to be ignored

Hi Lukas, this was a bug which is fixed in SVN revision 4072. Cheers, Thomas On 12 Mar 2014, at 05:07, Lukáš Pravda xpra...@ncbr.muni.cz wrote: Dear PyMOL users, I’m wondering about coloring CGO objects in PyMOL. In the recent version 1.7. If ALPHA is specified for a cgo object, all

[PyMOL] Volume API and panel improvements

Dear all, I like to announce some significant changes to the volume user interface and API, as of SVN revision 4072. This is considered a beta feature and we welcome any kind of feedback. Changes include: * new commands: volume_color, volume_ramp_new * volume presets * custom volume

[PyMOL] color each polymer chain differently

Dear PyMOL users, I build 100 chains of polymer in a box. Residue number is different for every chain. Chain 1 has residue no. 1, chain 2 has residue no. 2 and so on. I want to color each chain differently. So, I wrote a script which generates a pml file, and opening this pml file with PyMOL

Re: [PyMOL] color each polymer chain differently

I think... What is happening is that the color command should take in a name like “color yellow, i. 1 or a CMYK color vector. When you are saying “color 1” it is just starting at the first index of CMYK which is black. There is a command for your problem though. Just say util.color_chains()