On Thu, Mar 13, 2014 at 10:21 AM, Jordan Willis <jwillis0...@gmail.com>wrote:
> I think...
>
> What is happening is that the color command should take in a name like
> "color yellow, i. 1" or a CMYK color vector. When you are saying "color
> 1" it is just starting at the first index of CMYK which is black.
>
> There is a command for your problem though. Just say util.color_chains()
> and it will color all individual chains a different color.
>
Thanks Jordon for the reply.
I tried using util.color_chains(). It colors differently upto chain no. 26.
After 26 all the chains are of same color, as I donot have chain no after
that.
Some utility which can color by residue number would be very useful.
Chandan
>
>
>
> On Mar 12, 2014, at 11:15 PM, Chandan Choudhury <iitd...@gmail.com> wrote:
>
> >
> > Dear PyMOL users,
> >
> > I build 100 chains of polymer in a box. Residue number is different for
> every chain. Chain 1 has residue no. 1, chain 2 has residue no. 2 and so
> on. I want to color each chain differently.
> > So, I wrote a script which generates a pml file, and opening this pmlfile
> > with PyMOL should color each chain differently.
> >
> > ##color.pml
> > load 128md_c.pdb
> > select 1, i. 1
> > color 1, i. 1
> > select 2, i. 2
> > color 2, i. 2
> > select 3, i. 3
> > color 3, i. 3
> > select 4, i. 4
> > color 4, i. 4
> > select 5, i. 5
> > color 5, i. 5
> > select 6, i. 6
> > color 6, i. 6
> > select 7, i. 7
> > ...
> > ...
> > color 125, i. 125
> > select 126, i. 126
> > color 126, i. 126
> > select 127, i. 127
> > color 127, i. 127
> > select 128, i. 128
> > color 128, i. 128
> >
> > I have 128 chains.
> >
> > What I find that mostly green or black dominates the coloring.
> > While displaying color by the numeric code, what is the maximum no,
> after which the color repeats?
> >
> > Chandan
> >
> > --
> > Chandan Kumar Choudhury
> > National Chemical Laboratory, Pune
> > India
> >
> >
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>
--
--
Chandan Kumar Choudhury
National Chemical Laboratory, Pune
India
------------------------------------------------------------------------------
Learn Graph Databases - Download FREE O'Reilly Book
"Graph Databases" is the definitive new guide to graph databases and their
applications. Written by three acclaimed leaders in the field,
this first edition is now available. Download your free book today!
http://p.sf.net/sfu/13534_NeoTech
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