Re: [PyMOL] How to show the surface border of a specific residue?

2014-07-25 Thread Ooker
Hi Jared, thanks for your efford. Just to add more information, if you have to do it many times, you'd better overlay the border by a script. You can use ImageMagick or GraphicMagick to do that. composite -gravity center overlay.png base.png base_with_border.png: See

[PyMOL] Saving trajectory outputs

2014-07-25 Thread James Starlight
Dear Pymol Users! I wounder whether it will be possible to save big ensemble of the loaded into pymol Pdb's files as the trajectory output (like dcd format) what are actually can be performed by vmd (e.g by means of http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/animatepdbs/). The

[PyMOL] pymol in OS X 10.10

2014-07-25 Thread Walker, Ryan (walker3)
Hi, I was wondering if there is a work around to get the PyMOL app to launch in OS X 10.10 (Yosemite)? Currently, when trying to launch the app from /Applications folder it does nothing. I have the new XQuartz. When I try to launch it using terminal, I get this error: $python