Hi Hugo,
unfortunately, "partial" loading of named selections is currently not
supported. As a workaround, you could use the following function to write out a
script which recreates all current selections.
from pymol import cmd
@cmd.extend
def dump_selections(filename):
'''
DESCRIPTION
Dump a script which recreates all current named selections
'''
handle = open(filename, 'w')
for name in cmd.get_names('selections'):
for (model, index) in cmd.index(name):
print >> handle, 'cmd.select("%s", "(%s`%d)", merge=1)' % (
name, model, index)
Hope that helps.
Cheers,
Thomas
On 05 Feb 2015, at 06:44, Hugo Botelho <hugobote...@gmail.com> wrote:
> Dear all,
>
> I wish to merge multiple PyMOL *.pse sessions. Each file contains multiple
> objects and named selections. The names of each object and selection are
> unique.
>
> Is there a way to merge two pse files while preserving named selections?
>
> I followed the advice of a previous thread (
> https://sourceforge.net/p/pymol/mailman/message/28993953/ ) and tried the
> following commands:
>
> load sessionA.pse
> load sessionB.pse, partial=1
>
> These commands indeed merge the two sessions but ALL named selections in
> sessionB.pse are lost.
>
> Thank you,
> Hugo
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
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