Re: [PyMOL] Cartoon visualization of per-residue txt data

2015-04-12 Thread Thomas Holder
Hi James, ss is a reserved keyword of the selection language, so you should not use it as the name of an object or selection. Cheers, Thomas On 12 Apr 2015, at 09:24, James Starlight jmsstarli...@gmail.com wrote: and also a question- how it would be possible to do something with the

Re: [PyMOL] Cartoon visualization of per-residue txt data

2015-04-12 Thread James Starlight
Hi Tsjerk, the interesting option for coloring which I found to set sensitivity of the visualization in my case: spectrum b, red_orange_white, minimum=-1, maximum=0.1 are there any same commands to set transparency level according to the B-factor value? Here the issue is with the proper

Re: [PyMOL] Pymol molecular visualisation

2015-04-12 Thread James Starlight
Thanks ! still have not found solution for grid-mode display: 1- I need to show names of each opened object near its cartoon 2- I need to increase spacing of grid border (m.b like just empty space)- to better discriminate between opened objects in case of its high zooming J 2015-04-11 14:51

Re: [PyMOL] Cartoon visualization of per-residue txt data

2015-04-12 Thread James Starlight
and also a question- how it would be possible to do something with the selection based on the b-factors e.g PyMOLselect ss, b -0.2 Selector: selection ss defined with 119 atoms. than I've tried to make visualization of the residues within the ss to display residues names from the label