Hi Rajib & Yuktimmana,
For the question about ball & stick see this page on the wiki:
http://www.pymolwiki.org/index.php/Ball_and_Stick
HTH,
Folmer
2015-04-23 7:41 GMT+02:00 bkpsusmitaa :
> Hi!
>
> So far we have been able to make only stick models for molecules.
>
> We now wish to build bot
Hi!
So far we have been able to make only stick models for molecules.
We now wish to build both solid (based on electronic clouds) and Ball
& stick models.
Can we have several molecules of identical types to build crystal
structures, amorphous structures or fluide models, as the cases could
be f
Thanks, it was indeed due to the autodock plugin setting retain_order. That
would have taken me quite a while to debug on my own!
-Spencer
On Wed, Apr 22, 2015 at 6:03 PM, Matthew Baumgartner wrote:
> Hi,
>
> I had problems with the retain order setting as well. The autodock vina
> pulgin turns
Hi,
I had problems with the retain order setting as well. The autodock vina
pulgin turns it on. Unload the plugin to fix it, or manually set it
after plugins are loaded.
Matt
On 4/22/15 8:56 PM, Thomas Holder wrote:
> Hi Spencer,
>
> please check your retain_order setting, it should be off (de
Hi Spencer,
please check your retain_order setting, it should be off (default). If it's on,
also check your pymolrc if you're setting it there.
http://www.pymolwiki.org/index.php/Retain_order
http://www.pymolwiki.org/index.php/Pymolrc
Cheers,
Thomas
On 22 Apr 2015, at 20:39, Spencer Bliven
I'm working on a script which involves joining two objects together, which
I do using the create command. The input objects have different chain
identifiers, but identical residue numbers. When I create the joined
object, I would expect all atoms from the first object to be added,
followed by all a
Thanks,
it works fine only for the font size of the label
of the
menu , for example File , but when I
open File menu its items all have
the original
size and not the increased one and the same
working there
is for the PyMOL viewer window
for ASHL , mouse mode etc.
It is
possible to modify your
Hi Saverio,
the attached script works for me to change the font size dynamically while
PyMOL is running. To increment the font size by 5 points, do:
PyMOL> run inc_fontsize.py
PyMOL> inc_fontsize 5
The script also binds CTRL-PageUp and CTRL-PageDown.
Cheers,
Thomas
import pymol
from pymol i
Original Message
SUBJECT:
Re: [PyMOL]
Problem with How do I change the font in the Tck/Tk external GUI
window?
DATE:
Wed, 22 Apr 2015 18:21:56 +0200
FROM:
s...@tiscali.it
Hi Saverio,
The file is the correct one.
Inside the file
./python2.7/dist-packages/pmg_tk/PMGApp.py
find the line
def initializeTk_unix(self):
pass
and change it to make it look like
def initializeTk_unix(self):
self.root.option_add('*Font', 'Lucida 10')
self
Hi,
I have installed pymol on Ubuntu 14.10
with sudo apt-get install
pymol.
Now I need to change the size of char in
the gui menus.
I have
read the FAQ about this need.
How do I change the font in the Tck/Tk
external GUI window?
* Open pymol/modules/pmg_tk/PMGApp.py in a text
editor
Dear Dr. Holder,
Yes, we have downloaded, unpacked and checked. We can build molecules.
Thank you.
Regards,
Rajib & Yuktimmana
On 04/22/2015 09:43 AM, Rajib/Susmita Bandopadhyay wrote:
> Dear Dr. Holder,
> Thank you for responding to our emails.
> The problem is that we use Knoppix Live Image for
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