[PyMOL] [BUG?] Selection by secondary structure - Pymol 1.8.0.0 r4144

Hello everyone! Since the last open source version of pymol (1.8.0.0 r4144) on Python 2.7, I'm not able to perform a selection by secondary structure except with coil example : * color red, ss s #not working (no error message) * color red, ss h #not working (no error message) * color

Re: [PyMOL] [BUG?] Selection by secondary structure - Pymol 1.8.0.0 r4144

I had this same issue when I was working on Christmas… sorry I forgot to post it to the list. I ended up going back to a 1.7.6 version to get it done. 1.8 now distinguishing between upper and lowercase letters This means that the old “ss s” is now “ss S”. It’s a bit of a pain for long time

Re: [PyMOL] [BUG?] Selection by secondary structure - Pymol 1.8.0.0 r4144

Thank you :) I add "set ignore_case, on" on the pymolrc to get back the non case sensitive option, and now all works like before indeed! -- Tubiana Thibault PhD Student Institut de Biologie Intégrative de la Cellule CNRS UMR 9198 CEA-Saclay, Bâtiment 532 - Pce 12A 91191 Gif-sur-Yvette

[PyMOL] optimize and open babel troubles

Hello all, I am trying to utilize the optimize plugin within pymol. I have installed open babel per their instructions on their website. All of the "test to see if it is working" tests seem to work (eg,using import openbabel in the cmd window). For what it is worth, I am running 64 bit windows,

Re: [PyMOL] optimize and open babel troubles

Ubuntu’s universe repository has a 32-bit version of pymol? http://packages.ubuntu.com/precise/pymol Obviously, being a 4-year old distro, it is an older release, but it may still work with the plugin. -David > On Jan 6, 2016, at 2:39 PM, Joe Gauthier wrote: > >