Re: [PyMOL] Segmentation fault

2017-04-12 Thread João M . Damas
Thanks for the tips Thomas. I will try and let you know. João On Tue, Apr 11, 2017 at 9:12 PM, Thomas Holder < thomas.hol...@schrodinger.com> wrote: > Hi João, > > Before diving into the hassle of installing additional compilers (which > probably won't make a difference) I recommend to get

Re: [PyMOL] PyTMs

2017-04-12 Thread Andreas Warnecke
Hej Raag, my name is Andreas and I wrote PyTMs back for my PhD. It essentially uses PyMOLs basic editing functions to build PTMs onto protein models. PyTMs is a simple tool and has its clear restrictions, but generally it is nice to play around with and explore hypotheses with. The challenge is

[PyMOL] PyTMs

2017-04-12 Thread Raag Saluja
Hi! PyTMs is wonderful and permits me to really play around with a lot of different PTMs! In PyTMs, I can find some of the PTMs that I need to work on (acetylation and phosphorylation) for my PhD. However, there are some PTMs that I need to work on for my PhD, but I can't find those features in

Re: [PyMOL] plugin manager

2017-04-12 Thread Thomas Holder
Hi Raag, You need to run MacPyMOL with the "X11 Hybrid" interface, see: https://pymolwiki.org/index.php/MAC_Install#X11_Hybrid Cheers, Thomas On 12 Apr 2017, at 08:02, Raag Saluja wrote: > Hi! > > I needed to install PyTMs but am unable to do so. I can't find the

[PyMOL] plugin manager

2017-04-12 Thread Raag Saluja
Hi! I needed to install PyTMs but am unable to do so. I can't find the plugin manager. In the menu, after the wizard I have 'help' not 'plugins'. I installed the educational version of MacPyMOL in around Aug/Sep 2015. Looking forward to your help, Regards, Raag