[PyMOL] How to identify the pocket of a protein?

2017-07-11 Thread Mohammad Goodarzi
Hello, I am wondering whether it is possible to find the pocket of a protein in Pymol? lets say I have a protein and a ligand inside the pocket. I want to estimate the x, y and z Best Regards, Mohammad -- Check out the vi

Re: [PyMOL] show nonbonded atoms with stick representation

2017-07-11 Thread Thomas Holder
Hi Gianluca, https://pymolwiki.org/index.php/nb_spheres Cheers, Thomas > On Jul 10, 2017, at 1:31 PM, Gianluca Tomasello wrote: > > Hi, is it possible to render nonbonded atoms as small spheres using only > stick representation? -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc.

[PyMOL] show nonbonded atoms with stick representation

2017-07-11 Thread Gianluca Tomasello
Hi, is it possible to render nonbonded atoms as small spheres using only stick representation? -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot__