This is great, thanks! I created a dae file with some geometry instances
before I saw this email, but I think you guys are well beyond that point
already. And yes -- one sphere per color seems like the best that can be
done simply with Collada 1.4, and it would already be a huge improvement in
Hi Gary and Thomas -
As Thomas mentioned, the sphere/cylinder/etc. primitives described in the
COLLADA 1.5 spec as ("boundary representation") elements would be the
best option for spheres and basically all other PyMOL representations except
for molecular surfaces. Unfortunately COLLADA 1.5
On 06-Jun-2018 11:29, Thomas Holder wrote:
PyMOL uses OpenGL on macOS, so if Apple drops it, we're screwed :-(
I was afraid of that.
For now they have deprecated it, let's hope that they ship the
libraries for a couple more years...
Or somebody writes OGL2MTL - a library with the OpenGL
Hi David,
PyMOL uses OpenGL on macOS, so if Apple drops it, we're screwed :-( For now
they have deprecated it, let's hope that they ship the libraries for a couple
more years...
Thomas
> On Jun 6, 2018, at 6:23 PM, David Mathog wrote:
>
> As reported here:
>
>
Hi Gary,
Do you know an application which can actually read COLLADA files with sphere
primitives? We've faced the problem that most tools only handle COLLADA 1.4, so
if PyMOL would use COLLADA 1.5 features, the programs we know wouldn't read the
exported files. See
As reported here:
https://arstechnica.com/gadgets/2018/06/the-end-of-opengl-support-other-updates-apple-didnt-share-at-the-keynote/
Apple has declared that they are dropping support for OpenGL from OS X.
How will that affect PyMOL on OS X? Does that version already use metal
(or something
The collada file exported by pymol would be smaller and export/import
faster, I think, if it used geometry_instance for spheres rather than
giving each sphere its own geometry/mesh/accessors/etc.. Has that been
discussed before?
--
Gary Oberbrunner
I'm running PyMOL v-2.2.0a0 on my Debian Stretch Platform and installed
the current autodock plugin.
Execution of the plugin on a test system 1ACL.pdb (I have run this
system with MGL_Tools as the gui) did produce correct results.
However the execution of the plugin differed from what I
The collada file exported by pymol would be smaller and export/import
faster, I think, if it used geometry_instance for spheres rather than
giving each sphere its own geometry/mesh/accessors/etc.. Has that been
discussed before?
--
Gary
