Hello all I want to align each frame pdb w.r.t a specific frame pdb. Let assume i have 10 pdb files.I have another file "avg.pdb". I want to align each pdb w.r.t "avg.pdb" file. I can do it manually using align command i.e align 1, avg. But is there any code or anything by which i can produce alignment files and save them as new pdb. Any suggestion is welcome Thank you Abhik
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