Re: [PyMOL] how to make selected residues blurry?

2018-11-30 Thread Jared Sampson
Hi Arthur - The `transparency` setting affects only surface representations.  I believe you're looking for `set cartoon_transparency, 0.8, sele`.    https://pymolwiki.org/index.php/Cartoon_transparency Hope that helps. Cheers, Jared On November 30, 2018 at 3:41:57 AM, sunyeping via PyMOL-user

Re: [PyMOL] PyMOL-users Digest, Vol 150, Issue 13

2018-11-30 Thread ahoneg
> > Today's Topics: > > 1. how to make selected residues blurry? (sunyeping) > > > -- > > Message: 1 > Date: Fri, 30 Nov 2018 12:14:21 +0800 > From: "sunyeping" > To: "pymol-users" > Subject: [PyMOL] how to make selected r

[PyMOL] how to make selected residues blurry?

2018-11-30 Thread sunyeping via PyMOL-users
Dear all, Could you please check this figure at the following link? https://drive.google.com/file/d/1Uh9JRh7x0sjv-zGp_0ZKPc1cnWotkZA0/view?usp=sharing The structure in blue in this figure is prepared from chain A of pdb id 4gms. Some residues are highlighted and look sharp ( as indicated in the