Re: [PyMOL] How to calculate rmsd between each state of a MD simulation trajectory and a reference structure?

Yeping, not sure the question was addressed to me, but per the Pymol Align wiki page the numbers you are referring to are 1. RMSD after refinement 2. Number of aligned atoms after refinement 3. Number of refinement cycles 4. RMSD before refinement 5. Number of aligned atoms before r

Re: [PyMOL] aberrant behavior of mouse clicks in PyMOL

Hi Vaheh, Which version of PyMOL do you use? Could it be this issue? https://github.com/schrodinger/pymol-open-source/issues/35 Cheers, Thomas > On Aug 21, 2019, at 10:04 PM, Oganesyan, Vaheh > wrote: > > Hi All, > > > I’m experiencing very annoying behavior of mouse clicks when there