Hi Quyen,
This works for me:
export QT_QPA_PLATFORM=xcb
pymol
Hope that helps.
Cheers,
Thomas
On Sun, Nov 3, 2019 at 6:15 AM RDirective wrote:
>
> Dear all,
>
> I have a slight problem with Pymol on Fedora 31. The vanilla distribution
> runs Gnome on Wayland. Pymol complains that
Update:
worked the same for me, but may have impact in other cases:
MIN_LEVEL = 0
MAX_LEVEL = 20
LEVEL_RANGE = np.arange(MIN_LEVEL, MAX_LEVEL+0.5, 0.5)
def _get_map(map_name):
dump_fhandle, dump_fname = tempfile.mkstemp()
open(dump_fhandle).close()
try:
levels = {}
For the sake of completeness here is some working code.
`dump` exports the surface of map representations. They are all surfaces.
So I had to dump the map at each level (0.5 by 0.5 increment) in order to
get a filled volume. If you concatenate all xyz arrays you get the filled
volume of the
