Hi Lorenzo and Blaine,
There is a "set_bond" command which can set (some) settings for individual
bonds.
To change stick color and radius for the bond between atom 2 and 3:
set_bond stick_color, yellow, index 2, index 3
set_bond stick_radius, 0.2, index 2, index 3
Cheers,
Thomas
> On Dec
Hi Lorenzo,
The use the lines instead of sticks may reduce the anticipated hit on
performance.
There is a line_color setting that use you can.
Best regards,
Blaine
From: Lorenzo Gaifas [bris...@gmail.com]
Sent: Wednesday, December 11, 2019 9:48 AM
To:
Hi Lorenzo,
You could make an object out of the elastic bonds with the 'create' command,
show it as sticks, and use the stick_color setting to color the sticks only.
You could make different objects for different subsets of the elastic bonds and
color them differently.
Here is an example of
Hi Blaine,
Yes, that's essentially what I'm doing. My worry is that since this doubles
the amount of coordinates to keep track of, it will be detrimental to how
long a trajectory I can load. Is there any other way to do this?
On Wed, Dec 11, 2019, 16:31 Mooers, Blaine H.M. (HSC) <
Dear pymol users,
I'm trying to properly represent a coarse-grained protein model that has an
elastic network.
I would like to show the bonds that are part of the elastic network with a
different color (and possibly representation) from the normal bonds between
atoms. However, as far as I know,
Dear list subscribers,
we are very delighted to announce this year’s
“34th Molecular Modelling Workshop (MMWS)” (http://mmws2020.mgms-ds.de)
that takes place on Monday 17th to Wednesday 19th February 2020
at the Friedrich-Alexander-University in Erlangen, Germany.
The MMWS has a long history
