If you need a convenient method for C-alpha only secondary structure
assignment, I can recommend SST:
https://pymolwiki.org/index.php/Sst
Cheers,
Thomas
> On Apr 16, 2020, at 2:50 PM, honeg...@bioc.uzh.ch wrote:
>
> When you look at the coordinate file for 3jav in a text editor, you'll see
Wow! I am always amazed at the level of knowledge on this list. Thank you both.
> On Apr 16, 2020, at 8:32 AM, Ali Kusay wrote:
>
> Hi Adam,
>
> As Annemarie has mentioned you will need a way of generating the backbone for
> the regions in the structure that have simply been resolved as Ca a
When you look at the coordinate file for 3jav in a text editor, you'll see that
for the parts of the structure which give you a "AssignSS-Warning: Ignoring
incomplete residue" feedback, the coordinate file contains C-Alpha coordinates
only, while in the parts which render the secondary structure
