Re: [PyMOL] cmd.get_fastastr()

Hi Pedro, cmd.get_fastastr() always returned a FASTA formatted string. What changed in PyMOL 2.2 is that it now creates a record for every chain, not just for every object. There is a new "key" argument, you get the old behavior with key="model". print(cmd.get_fastastr(key="model")) If you ac

Re: [PyMOL] Running PyMol (Linux) on Chromebook

Dr. Willis: Thank you very much for the suggestion. I will proceed to share it with the students and we will gladly report back what happens. As for the instruction line you mention: I assume this input on the (base) environment line indicated within the instalpython3.com/chromebook instructio

Re: [PyMOL] Running PyMol (Linux) on Chromebook

> I assume this input on the (base) environment line indicated within the > instalpython3.com/chromebook > instructions. This one. This is the command line terminal for instructions to send to the computer. Not to be confused with the Python Interpreter

Re: [PyMOL] Multi sequence edition simultaneously

Simultaneous multi-sequence edition Hi all, I have a question regarding adding peptide sequence to the original sequence in PyMOL. I have an original structure of a nanoparticle consisting of 420 monomers and I like to add a similar peptide sequence to each monomer. Is that any easy way to apply

Re: [PyMOL] Running PyMol (Linux) on Chromebook

Might I recommend a conda based solution. https://installpython3.com/chromebook/ Install miniconda on your Chromebook using the attached link. Then you can simply use conda to install pymol conda install -c schrodinger pymol Jordan Willis, PhD > On

[PyMOL] Running PyMol (Linux) on Chromebook

I am a university (UIC) faculty member who is directing some entering college students in a structured research programs. Things are going pretty well for those with MacOS or Windows computers. But I have a couple of students with Chromebooks who are attempting to install and run the Linux versi

[PyMOL] Multi sequence edition simultaneously

Hi, I have a question regarding adding peptide sequence to the original sequence in PyMOL. I have an original structure of a nanoparticle consisting of 420 monomers and I like to add a similar peptide sequence to each monomer. Is that any easy way to apply a sequence addition/ change to one m

Re: [PyMOL] Radius of gyration of a trimer

Correction: gyradius is the name. Em dom., 5 de jul. de 2020 às 06:42, Pedro Lacerda escreveu: > It can be accomplished with the following command (gyration on psico > library): > > https://pymolwiki.org/index.php/Radius_of_gyration > > > Em dom., 5 de jul. de 2020 às 04:15, Dr. Subramanian, Sen

Re: [PyMOL] Radius of gyration of a trimer

It can be accomplished with the following command (gyration on psico library): https://pymolwiki.org/index.php/Radius_of_gyration Em dom., 5 de jul. de 2020 às 04:15, Dr. Subramanian, Senthil Kumar < senth...@hu-berlin.de> escreveu: > Hello, > > I would like to measure radius of gyration for a

[PyMOL] Radius of gyration of a trimer

Hello, I would like to measure radius of gyration for a protein (1JB0). The PDB structure is only a monomer. But, I would like to find the RoG for the trimer. Could any one please help me? Bytheway, I failed massively even to get RoG for monomer and it says 'RoG is not defined'. I would apprecia