[PyMOL] H-bond distance unit

2016-03-19 Thread Amali Guruge
Dear All, I want to show the H bond distances in my receptor-ligand complex. I was able to get the distances, but I don't know how to add the unit (Å) to the end of the distance label. Can anyone help me? Thank you --

Re: [PyMOL] H bonds

2015-11-10 Thread Amali Guruge
elative close to > other charges of the opposite sign), Is not a good assumption if you have > Arg too close to others Arg, Lys or other residue of equal sign. > > What is the other think you notice? > > Cheers, > Osvaldo. > PD: please just call me Osvaldo. > > >

[PyMOL] h_add command

2015-11-10 Thread Amali Guruge
Dear All, I used the command h_add to add H to the enzyme. But when it contains Arg group it added two hydrogens to =NH group. How can I solve that problem? Thank you in advance. --

[PyMOL] Stacking Interactions

2015-11-09 Thread Amali Guruge
Dear all, I want to know can we identify p-p stacking interactions using PyMOL? Can anyone help me? Thank you in advance. -- ___ PyMOL-users mailing list

[PyMOL] H bonds

2015-11-06 Thread Amali Guruge
Dear All, My question is related to find the polar contacts between an enzyme and ligand. I want to know when we find polar contacts, 1) protein should contain H atoms or not? 2) ligand molecule should contain all H atoms or not Please can anyone help me. Thank you in advance.