Re: [PyMOL] cartoon range transparency help

Hi Paul, check out https://pymolwiki.org/index.php/Cartoon#Breaking_Up_a_Visualization_with_Cartoon_Skip You'll want to skip the residues you want to make transparent in the original (opaque) object, and include some more residues on both ends in the copy you want to make transparent. Skip the

Re: [PyMOL] Help for saving movie in png

Hi Pranab, Am 13.11.2015 um 17:00 schrieb Pranab Jyoti Bhuyan: > Can you please tell me how to save a movie as a series of *.png files > from terminal in linux? This can be done with the mpng command. See http://pymolwiki.org/index.php/Mpng Cheers, Christian

Re: [PyMOL] scripting: pymol.session

@cmd.extend def print_foo(): print pymol.session.foo --- end script.py --- Cheers, Thomas On 29 Jan 2015, at 20:20, Christian Becke christian.be...@fu-berlin.de wrote: Dear pymol experts, I found some odd behaviour when trying to use pymol.session in my script. I'm using open source pymol

[PyMOL] scripting: pymol.session

Dear pymol experts, I found some odd behaviour when trying to use pymol.session in my script. I'm using open source pymol 1.7.4.0 (built from svn) on linux. Here comes a minimal example: 1) Create a directory, containing the following 2 files: --- script.py --- from pymol import cmd, session

Re: [PyMOL] REGARDING_PyMOL_3D_Movie_in_FFMPEG

. Looking forward to your reply... -- Sincerely, Tarun JaiRaj Narwani.. Protein Evolution Lab- Dr. S.Srikrishna IMTECH, Chandigarh @+91-8591641998 -- Christian Becke Freie Universität Berlin Fachbereich Biologie, Chemie, Pharmazie Institut für Chemie und Biochemie AG Strukturbiochemie Takustr

Re: [PyMOL] pymol 3D movies

-filters.html#stereo3d [4] http://www.imagemagick.org -- Christian Becke Freie Universität Berlin Fachbereich Biologie, Chemie, Pharmazie Institut für Chemie und Biochemie AG Strukturbiochemie Takustr. 6 14195 Berlin Germany Phone: +49 (0)30 838-57344 Fax: +49 (0)30 838-56981 E-mail: christian.be...@fu

Re: [PyMOL] movie, ~1700 residues, out of memory

On 09 Nov 2013, at 13:58, Christian Becke christian.be...@fu-berlin.de wrote: Dear pymol users, I'm trying to create a movie, using lsqman and pymol, of a molecule of ~1700 residues (HETATMs deleted, no hydrogens, alternative conformations removed). I created 60 pdb files with lsqman

[PyMOL] movie, ~1700 residues, out of memory

Dear pymol users, I'm trying to create a movie, using lsqman and pymol, of a molecule of ~1700 residues (HETATMs deleted, no hydrogens, alternative conformations removed). I created 60 pdb files with lsqman and loaded them (as different states of the molecule) into pymol. In the default lines