Hello,
I found in this repository http://muralab.org/~cmura/PyMOL/ an script
(average3d.py) to perform the sausage representation in PyMOL. Although it
works perfectly good with the pdbs given in the examples, I couldn't get
the same results for my molecule. After performing all the RMSD
Hello!
I'm trying to get multiple measures of angles and distances between some
residues for 232 states of the same molecule in PyMOL . I'm using this
command for that:
f=open('NE_S_C.txt','w')
var1=cmd.get_angle('39/NE2', '144/SG', '221/C', 1)
f.write("%8.3f\n"%var1)
Hi!
I have a group of structures (168 in total) and I want to align all of them
to the first one in order to know the RMSD calculation. For that purpose I
use the following:
f=open('rmsd.txt','w')
rms2=cmd.align('structure_0002 and name ca','structure_0001 and name ca')
.
. (NOTE: I got all of
