Re: [PyMOL] label with arbitrary string

2008-07-29 Thread Richard Baxter
Dear All, Can someone advise me how to insert a label with an arbitrary string, e.g. label (residue 200 and name ca), "My favorite C_alpha" Thanks for your help, Richard Baxter

[PyMOL] scenes and animate versus frames mdo

2008-02-19 Thread Richard Baxter
Dear All, I can make scenes and store them, but I do not understand how to us the animate or other commands to make a movie by moving from one scene to the next. I have made a simple movie with frames and mdo, but I am not sure how to us a command (mmatrix?) to associate a particular set_view wit

[PyMOL] move to go between set_view statements

2007-10-27 Thread Richard Baxter
Dear pymol-users, I have two figures and the specific orientation, depth, etc. is in the script as a set_view command. Can I write a movie script to go from set_view(1) to set_view(2) in a certain number of frames? thanks for your help, Richard Baxter

[PyMOL] making ribbon follow atoms other than Calpha

2007-07-31 Thread Richard Baxter
Dear All, I am wondering if one can have a cartoon in which the helices/strands track an atom in the residue other than CA (e.g. N, C, O). Any suggestions welcome. Richard -- "Form ever follows function" Louis Henry Sullivan, U.S. architect

[PyMOL] ray-traced stero figurea

2007-04-03 Thread Richard Baxter
iated. sincerely, Richard Baxter -- Richard Baxter

[PyMOL] scripting strangeness

2003-02-25 Thread Richard Baxter
Dear All, Below is a simple script I have to make a figure. When I enter the lines one by one the script file works. When I put the commands together in a file and run them with the '@' command the script runs successfully, but I don't see any evidence of its commands being carried out - the viewp

[PyMOL] specifying a view

2003-02-25 Thread Richard Baxter
he viewing angle and distance, so multiple figures of the pocket will be displayed the same? thanks for advice, Richard Baxter University of Chicago