Re: [PyMOL] [EXTERNAL] Differentiate between bond types by color and representation

2019-12-11 Thread Thomas Holder
Hi Lorenzo and Blaine, There is a "set_bond" command which can set (some) settings for individual bonds. To change stick color and radius for the bond between atom 2 and 3: set_bond stick_color, yellow, index 2, index 3 set_bond stick_radius, 0.2, index 2, index 3 Cheers, Thomas > On Dec 1

Re: [PyMOL] [EXTERNAL] Differentiate between bond types by color and representation

2019-12-11 Thread Mooers, Blaine H.M. (HSC)
Hi Lorenzo, The use the lines instead of sticks may reduce the anticipated hit on performance. There is a line_color setting that use you can. Best regards, Blaine From: Lorenzo Gaifas [bris...@gmail.com] Sent: Wednesday, December 11, 2019 9:48 AM To:

Re: [PyMOL] [EXTERNAL] Differentiate between bond types by color and representation

2019-12-11 Thread Mooers, Blaine H.M. (HSC)
Hi Lorenzo, You could make an object out of the elastic bonds with the 'create' command, show it as sticks, and use the stick_color setting to color the sticks only. You could make different objects for different subsets of the elastic bonds and color them differently. Here is an example of the

Re: [PyMOL] [EXTERNAL] Differentiate between bond types by color and representation

2019-12-11 Thread Lorenzo Gaifas
Hi Blaine, Yes, that's essentially what I'm doing. My worry is that since this doubles the amount of coordinates to keep track of, it will be detrimental to how long a trajectory I can load. Is there any other way to do this? On Wed, Dec 11, 2019, 16:31 Mooers, Blaine H.M. (HSC) < blaine-moo...@o