Re: [PyMOL] APBS plugin not working on both Ubuntu & Windows 7

2015-04-14 Thread David Hall
There is an "INSTALL" file that provides instructions. The first step, calling ./configure , generates pdb2pqr.py from pdb2pqr.py.in If you want to manually do it, it just changes the first line in the file to point to your python installation. But, since there's a whole bunch of other things ./co

Re: [PyMOL] APBS plugin not working on both Ubuntu & Windows 7

2015-04-14 Thread Matic Kisovec
Hello Brenton, I used the pdd2pqr provided by Ubuntu repositories (version 1.8) and installed it directly(with Synaptic) from there. The path on my Xubuntu system is: /usr/share/pdb2pqr/pdb2pqr.py I also tried setting something up on Windows but gave up eventually. Good luck and all the best, M

[PyMOL] APBS plugin not working on both Ubuntu & Windows 7

2015-04-13 Thread Brenton Horne
Hi, pdb2pqr.py doesn't exist in the pdb2pqr tar.gz file (for either 2.0.0 or 1.8 versions; in a previous question I was advised to use the 1.8 version) and consequently APBS tools doesn't work. I have tried turning the pdb2pqr.py.in into pdb2pqr.py by removing the "in" extension, but the APBS