Hi Alicia,
the DistancesRH script seems to do a lot of specific stuff beyond simple
distance matrix calculation. If you have scipy installed, this will give
you a distance matrix:
from pymol import cmd
from scipy.spatial.distance import cdist
coords = cmd.get_model('guide').get_coord_list()
dista
Hi all,
I am trying to make a data matrix of pairwise distances between all alpha
carbons of a protein. Currently I am using the script DistancesRH but this
spits back the distances from one alpha carbon to all other atoms. Any way
to only do CA to CA or is there another script to use? Thanks
- A
