Hi Appu,
if I understand you correct then you have a structure with at least two
domains. If you align two conformations of that structure, one domain
does not get superposed nicely. Right?
The psico module provides the command angle_between_domains, which
is what you are looking for I guess.
Dear user
Can you please help me in finding the angle between
two structure upon alingment. I have aligned two structure and one
structure is not perfectly aligned on other. There is domain of two
structure tilting outward upon alignment. IS there any way to find the
angle
