OK. I will look at the PyMOL code if I need to. For instance:
LINE has eight parameters. I don't know what the first two are.
LINE ? ? x1 y1 z1 x2 y2 z2
On Sun, Dec 21, 2014 at 3:17 PM, Tsjerk Wassenaar tsje...@gmail.com wrote:
Hi Bob,
Unfortunately, there is little documentation on
where are you getting this from? I don’t see a LINE command in
pymol/modules/cgo.py
-David
On Dec 22, 2014, at 11:40 AM, Robert Hanson hans...@stolaf.edu wrote:
OK. I will look at the PyMOL code if I need to. For instance:
LINE has eight parameters. I don't know what the first two
OK, that explains it. I think I made that one up. It was a while ago that I
worked on this. :)
I see the list at
https://github.com/speleo3/pymol/blob/master/modules/pymol/cgo.py
Thanks, David.
Bob
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Dive into the
I am not sure where the LINE command is coming in, but when I have worked
with CGO I have done BEGIN LINES COLOR cr cg cb VERTEX x1 y1 z1 VERTEX x2
y2 z2.
On Mon Dec 22 2014 at 8:56:29 AM David Hall li...@cowsandmilk.net wrote:
where are you getting this from? I don’t see a LINE command in
Subject: Re: [PyMOL] CGOs
OK, that explains it. I think I made that one up. It was a while ago that I
worked on this. :)
I see the list at
https://github.com/speleo3/pymol/blob/master/modules/pymol/cgo.py
Thanks, David.
Bob
# CGO documentation
This documentation will attempt to shed some light
Great. Thanks very much. The ones perhaps missing there are:
#define CGO_INDENT 0x18
#define CGO_RESET_NORMAL 0x1E
#define CGO_PICK_COLOR 0x1F
And I think
#define CGO_LIGHTING 0x0B50
may be an internal flag, not a CGO command.
Happy holidays!
Q: Is there a resource that describes the syntax for compiled graphical
objects in PyMOL?
I see http://pymol.sourceforge.net/newman/user/S0500cgo.html, but that is
pretty minimal.
Bob
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Department of Chemistry
Hi Robert,
I do not have a proper answer to your question, but two other resources to
try to learn about CGO in PyMOL are.
http://www.pymolwiki.org/index.php/Category:CGO
the folder examples/devel/ in your PyMOL installation
On Sun, Dec 21, 2014 at 3:06 PM, Robert Hanson hans...@stolaf.edu
I'm looking for something that is relatively comprehensive. There are far
more commands than VERTEX, CYLINDER, CONE, and SPHERE, I think.
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Hi Bob,
Unfortunately, there is little documentation on CGO objects. You can have a
look in modules/cgo.py and in the example scripts in examples/devel/ in the
pymol directory to get some more information. If there is something
specific you want to do, please let us know.
Cheers,
Tsjerk
On
Thanks for taking the time to answer. I understand the concepts of blending
normals and the importance of vertex ordering in terms of normal generation.
Is vertex ordering important to PyMol CGOs (after normals have already been
generated).?
My ray traced images look good, however, they can
: [PyMOL] CGOs and TRIANGLE primitive
I am developing software for lead optimization that analyzes the
differences
between multiple enzymes implicated in drug targets. I wanted to
implement
some method for visualization of these differences and PyMol seemed like
an
ideal tool for rendering since
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