Re: [PyMOL] Caver 3.0 pugin

2013-11-18 Thread Stephen P. Molnar
On 11/17/2013 03:02 PM, James Starlight wrote: Hi Stephen, you should try lattest CAVER which could be downloaded from http://www.caver.cz before installing it via Pymol plugin menu, you should to open caver-3.0-1.py http://caver-3.0-1.py and find here CAVER3_LOCATION =

Re: [PyMOL] Caver 3.0 pugin

2013-11-17 Thread Stephen P. Molnar
I would be interested in just how the problem has been solved! I just installed caver v-2.1.2 in the 64 bit Debian Testing with PyMOL v-1.6.0.0 compiled from the latest svn and functioning perfectly on my system. Carver installed from the PyMOL wicki via the PyMOL Plugin Manager without any

Re: [PyMOL] Caver 3.0 pugin

2013-11-17 Thread James Starlight
Hi Stephen, you should try lattest CAVER which could be downloaded from http://www.caver.cz before installing it via Pymol plugin menu, you should to open caver-3.0-1.py and find here CAVER3_LOCATION = directory/where/caver3/is/located and modify this on your path providing it to the jar file

[PyMOL] Caver 3.0 pugin

2013-11-15 Thread James Starlight
Dear Pymol Users! In the latest 3.0 releases of the CAVER plugin lack the source path for the caver.jar launch file. Could you tell me how I could define this path manually from pymol shell? I've try to make calculations with thus plugin having Caver 3.0 dir in the work folder but obtained error

Re: [PyMOL] Caver 3.0 pugin

2013-11-15 Thread James Starlight
This issue have been solved. Caver works fine. Does anyone tried to include path information obtained by caver to the NAMD steered md simulation? I'm looking for the protocol for guiding namd forces along the direction obtaned from CAVER. James 2013/11/15 James Starlight jmsstarli...@gmail.com