Re: [PyMOL] Effect of different align method

2020-06-17 Thread Robert Campbell
keep the input file > in secrete. I have changed the access right to them, so you can > download them freely. Best, Yeping Sun > ------------------ > From:Julien CAPPELE > Sent At:2020 Jun. 17 (Wed.) 17:05 > To:孙业平 > Subject:R

Re: [PyMOL] Effect of different align method

2020-06-17 Thread sunyeping via PyMOL-users
:2020 Jun. 17 (Wed.) 17:05 To:孙业平 Subject:Re: [PyMOL] Effect of different align method Hello Sunyeping, I would suggest you to try TM-align, and a very good way to use it for multi-protein alignment is to use their server mTM-align. TM-align is a very robust alignment tool that will in most o

[PyMOL] Effect of different align method

2020-06-16 Thread sunyeping via PyMOL-users
Dear pymol users, I am trying to align two very similar trimeric molecules. I tried different alignment commands including "align", "cealign" and "super", but none of them gives satisfying effect. Athough the backbone conformations and orientations of two two molecules look very similar, there