Re: [PyMOL] Make sure zoom is viewed from surface

2012-10-09 Thread Thomas Holder
Hi Troels, Jason, Edward, nice little problem and nice layouts by Jason and Edward. Let me contribute some code, it follows Edwards approach. See attachment. Requires psico. Cheers, Thomas Edward A. Berry wrote, On 10/08/12 20:57: Jason Vertrees wrote: Hi Troels, I've run into this prob

Re: [PyMOL] Make sure zoom is viewed from surface

2012-10-08 Thread Edward A. Berry
Jason Vertrees wrote: > Hi Troels, > > I've run into this problem a few times, too, but never took the time > to solve it correctly. > > A quick plan might look like: >* cmd.orient on the selection >* store the view vector (http://www.pymolwiki.org/index.php/Get_View) >* let C1 = count

Re: [PyMOL] Make sure zoom is viewed from surface

2012-10-08 Thread Jason Vertrees
Hi Troels, I've run into this problem a few times, too, but never took the time to solve it correctly. A quick plan might look like: * cmd.orient on the selection * store the view vector (http://www.pymolwiki.org/index.php/Get_View) * let C1 = count the number of atoms behind the view vecto

[PyMOL] Make sure zoom is viewed from surface

2012-10-07 Thread Troels Emtekær Linnet
Hi pymolers. I am generating a list of residue ID's from some calculations. Now I want to make a little script that select the residue and sticks it and then zoom and make .png file. How do I make sure that the zoom, is viewed from "outside" the protein for each residue/.png file? Best Troels E