Hello,
I am using PyMOL in my senior biochemistry course. I am using a Macbook Pro
with the latest version of the OS. I downloaded the educational version of
PyMOL, and was able to load a PDB file, 2G47, and manipulate colors and what is
seen and what is hidden. However, I attempted to use the
Hi,
I noticed that the mutagenesis wizard uses PYMOL_PATH/data to locate the
chempy sidechains, however, PYMOL_DATA would be more appropriate if the
data is not installed alongside the pymol modules.
The attached patch fixes this.
Michael
--- ./modules/pymol/wizard/mutagenesis.py.orig
Michael,
I think you're right. We'll make and push the changes.
Cheers,
-- Jason
On Mon, Jan 20, 2014 at 10:40 AM, Michael Banck mba...@gmx.net wrote:
Hi,
I noticed that the mutagenesis wizard uses PYMOL_PATH/data to locate the
chempy sidechains, however, PYMOL_DATA would be more
Dear PyMol users,
The mutagenesis wizard does not seem to work if ignore_case is set to
0. I can reproduce this on an older incentive build and on the OS X
compiled version from svn revision 4007.
Thanks,
Marius
--
This
Dear PyMol users!
I've desided to make this topic for my questions linked with the
mutagenesis wizard setup.
First of all I've already tried to make some point mutations in my proteins
and all worked perfect. I just want ask about definition of the new
torsions for the mutated residue. E.g I
confusion.
-Original Message-
From: pymol-users-boun...@lists.sourceforge.net
[mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf
Of Mitchell J Stanton-Cook
Sent: Thursday, September 20, 2007 9:04 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Mutagenesis wizard
Hi
Hi,
To perform the mutations I have followed the steps as per:
http://www.pymolwiki.org/index.php/Mutagenesis
However, step 6. (apply) results in this:
Selector-Error: invalid model and.
( ( Model and _mutate_sel ) )--
Anyone with any ideas?
Cheers
Mitch
--
Mitchell Jon Stanton-Cook
PhD
Hello all !
I would like to employ pymol to perform some mutagenesis.
At present there is the mutagenesis wizard. Is it possible to execute
this from the command line ?
i.e.
sel resi X
set mutant to CYS
mutate(x)
save strucutre
Cheers Mitch
