Re: [PyMOL] Problem with h_add hydrogens in sequence viewer

2015-03-12 Thread Matthew Baumgartner
e I want to add hydrogens to a structure or not having the autodock plugin loaded? I've cc'd the author of the plugin, Daniel Seeliger, hopefully he can shed some light on whether this setting is necessary for the functionality of the plugin. Matt *Re: [PyMOL] Problem with h_add hydrog

Re: [PyMOL] Problem with h_add hydrogens in sequence viewer

2013-03-26 Thread Thomas Holder
Hi Matt, use the "sort" command after adding atoms: PyMOL> h_add 1ycr PyMOL> sort See also: http://pymolwiki.org/index.php/Sort Cheers, Thomas Matthew Baumgartner wrote, On 03/26/13 13:59: > Hi, > When I fetch a new structure (1YCR, for example) then run 'h_add 1ycr' > the hydrogens are add

[PyMOL] Problem with h_add hydrogens in sequence viewer

2013-03-26 Thread Matthew Baumgartner
Hi, When I fetch a new structure (1YCR, for example) then run 'h_add 1ycr' the hydrogens are added to the structure as expected, but they are put in the sequence viewer as their own residue with the same chain. This is problematic for several reasons, one is that it breaks selections, when I cl